FastQCFastQC Report
Mon 4 Sep 2023
EGAF00008204252

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008204252
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences43114029
Sequences flagged as poor quality0
Sequence length91
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATTGAACATGGTCTTGTGGATGAGCAGCAGAAAGTTCGGACCATCAGTG2281700852.92246753371159No Hit
CATTGAACATGGTCTTGTGGATGAGCAGCAGGAAGTTCGGACCATCAGTG1651302638.30081851083785No Hit
ATTGAACATGGTCTTGTGGATGAGCAGCAGAAAGTTCGGACCATCAGTGC1271060.2948135512920864No Hit
NATTGAACATGGTCTTGTGGATGAGCAGCAGAAAGTTCGGACCATCAGTG972560.22557854660254553No Hit
ATTGAACATGGTCTTGTGGATGAGCAGCAGGAAGTTCGGACCATCAGTGC920520.2135082295370725No Hit
CATTGAACATGGTCTTGTGGATGAGCAAATACGGCTGGAGTGCCGACGAG839280.19466517499443162No Hit
NATTGAACATGGTCTTGTGGATGAGCAGCAGGAAGTTCGGACCATCAGTG704950.1635082631688168No Hit
CTTGAACATGGTCTTGTGGATGAGCAGCAGAAAGTTCGGACCATCAGTGC581370.13484473928428262No Hit
CATTGAACATGGTCTTGTGGATGAGCAGCAGTAAGTTCGGACCATCAGTG518450.1202508816793717No Hit
CATGAACATGGTCTTGTGGATGAGCAGCAGAAAGTTCGGACCATCAGTGC515580.11958520508486925No Hit
CATTGAACATGGTCTTGTGGATGAGCTGTACAGAGAAGCACCTATTGACA466780.10826638354768467No Hit
CATTGAACATGGTCTTGTGGATGAGCAGCAGAAATTATATCCAGGATTGT464840.10781641400296872No Hit
TGTGCAAAAGCAAGAAGTCCTGGCAAGCGAGACACACTGGTATTAAGATT448280.10397543685838316No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)