FastQCFastQC Report
Mon 4 Sep 2023
EGAF00008204254

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008204254
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences267478
Sequences flagged as poor quality0
Sequence length91
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATTGAACATGGTCTTGTGGATGAGCAGCAGAAAGTTCGGACCATCAGTG15373157.474259565272654No Hit
CATTGAACATGGTCTTGTGGATGAGCAGCAGGAAGTTCGGACCATCAGTG7295627.275514247900762No Hit
CATTGAACAGGGTCTTGTGGATGAGCAGCAGAAAGTTCGGACCATCAGTG6400.23927201489468294No Hit
CATTGAACATGGTCGTGTGGATGAGCAGCAGAAAGTTCGGACCATCAGTG6350.23740270227831822No Hit
CTTGAACATGGTCTTGTGGATGAGCAGCAGAAAGTTCGGACCATCAGTGC4960.18543581154337926No Hit
ATTGAACATGGTCTTGTGGATGAGCAGCAGAAAGTTCGGACCATCAGTGC4790.17908014864773925No Hit
NATTGAACATGGTCTTGTGGATGAGCAGCAGAAAGTTCGGACCATCAGTG3920.1465541091229933No Hit
CATTGAACATGGTCTGGTGGATGAGCAGCAGAAAGTTCGGACCATCAGTG3660.1368336835178968No Hit
CATTGAACATGGTCTTGTGGATGAGTAGCAGAAAGTTCGGACCATCAGTG3590.13421664585498622No Hit
CATTGAACATGGTCTTGTGGATGAGCAGCAGAAAGATCGGACCATCAGTG3170.11851441987752262No Hit
CATTGAACAGGGTCTTGTGGATGAGCAGCAGGAAGTTCGGACCATCAGTG2940.10991558184224497No Hit
CATTGAACATGGTCTTGTGGATGAGCAGCAGAAAGTTCGGACCATCAGAG2890.10804626922588025No Hit
CATTGAACATGGTCTTGTGGATGAGCAGCAGAAAGTTCGGACCAACAGTG2870.10729854417933438No Hit
ATTGAACATGGTCTTGTGGATGAGCAGCAGGAAGTTCGGACCATCAGTGC2680.10019515623714847No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)