FastQCFastQC Report
Mon 30 Dec 2024
EGAF00008204528

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008204528
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences48946771
Total Bases4.9 Gbp
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT4289960.8764541383128216No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGTAGGAGTATCTCGTAT2182670.4459272706671498TruSeq Adapter, Index 3 (97% over 38bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGTAGGAGTATCGCGTAT849770.17361104371930888TruSeq Adapter, Index 3 (97% over 38bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)