FastQCFastQC Report
Mon 30 Dec 2024
EGAF00008204530

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008204530
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences61467529
Total Bases6.2 Gbp
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT7175811.1674147499893806No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTACGCCTTATCTCGTAT5081320.8266673612339289TruSeq Adapter, Index 7 (97% over 35bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTACGCCTTATCGCGTAT2031740.330538746725934TruSeq Adapter, Index 7 (97% over 35bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)