FastQCFastQC Report
Mon 30 Dec 2024
EGAF00008204532

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008204532
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences50979069
Total Bases5.1 Gbp
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT3106810.6094285480184034No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCCGTAAGAATCTCGTTT591180.11596524055784542TruSeq Adapter, Index 16 (97% over 37bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCCGTAAGAATCTCGTAT551980.10827581021536506TruSeq Adapter, Index 16 (97% over 37bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCCGTAAGAATCTCGGTT514020.10082961695514682TruSeq Adapter, Index 16 (97% over 37bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)