FastQCFastQC Report
Mon 30 Dec 2024
EGAF00008204534

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008204534
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences53527113
Total Bases5.4 Gbp
Sequences flagged as poor quality0
Sequence length101
%GC47

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT6501161.2145545753607148No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACATCACACGATCTCGTAT3050870.5699672239001569TruSeq Adapter, Index 1 (97% over 38bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACATCACACGATCGCGTAT957440.17887009897208542TruSeq Adapter, Index 1 (97% over 38bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)