FastQCFastQC Report
Mon 4 Sep 2023
EGAF00008205396

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008205396
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12583494
Sequences flagged as poor quality0
Sequence length50-150
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCATAAAACAAATCCCCCACCCCTGTTAGAAATCGGGAAGTCCCCGGTAG207540.16493034446553556No Hit
AGCGCCCGCATCCCCCCGCAACCCGCGTGGAGTATCGTACGTTTGGCCGC191160.15191329212697205No Hit
CATATAAACAACTGCTTAATCTGAAGCCTTATTTTTTAACGGTCTTAGAC164140.13044071861122197No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)