FastQCFastQC Report
Mon 4 Sep 2023
EGAF00008205471

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008205471
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12853666
Sequences flagged as poor quality0
Sequence length50-150
%GC36

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGTGAGTATAACCCCCGGTCATGTTAAACTTGATTGACTACCCCCGCCTA198970.15479630480518164No Hit
GTTCCTTCAACATATCCATCTCCACACCCAACTCCACATTCACCACTCTC134590.1047094268670121No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)