FastQCFastQC Report
Mon 4 Sep 2023
EGAF00008206160

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008206160
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13999830
Sequences flagged as poor quality0
Sequence length50-150
%GC61

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCGCCGTTTTTCCCCCGGGCTTTTTTCCACACTCGAACGGAGGCCGTCT3768652.691925544810187No Hit
TGCCGGTCTGGCGCGGGATCGACAGCACGGCGTTGCGGGCGCTCCAGAAG802530.573242675089626No Hit
TCGTAGGTCTTGCCGGTCTGGCGCGGGATCGACAGCACGGCGTTGCGGGC421590.3011393709780762No Hit
TAGGTCTTGCCGGTCTGGCGCGGGATCGACAGCACGGCGTTGCGGGCGCT401890.28706777153722585No Hit
TCTTGCCGGTCTGGCGCGGGATCGACAGCACGGCGTTGCGGGCGCTCCAG232860.16633059115717835No Hit
CGTAGGTCTTGCCGGTCTGGCGCGGGATCGACAGCACGGCGTTGCGGGCG148560.10611557426054459No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)