FastQCFastQC Report
Mon 5 Aug 2024
EGAF00008207580

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008207580
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences42189915
Total Bases4.2 Gbp
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT780800.1850679244080013No Hit
GTGTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGA622330.14750681531356485No Hit
CCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG606990.14387087530278267No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)