FastQCFastQC Report
Wed 31 Jul 2024
EGAF00008207610

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008207610
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences60865671
Total Bases6.1 Gbp
Sequences flagged as poor quality0
Sequence length101
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGAGACCAGGACAGCTGCTGAGACCTCTAAGAAGTCCAGATACTAAGAGC1281970.2106228320394266No Hit
GACCAGGACAGCTGCTGAGACCTCTAAGAAGTCCAGATACTAAGAGCAAA876590.14402042819835176No Hit
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT780080.12816419948775393No Hit
GAGGAGACCAGGACAGCTGCTGAGACCTCTAAGAAGTCCAGATACTAAGA775650.12743636720935844No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC658440.10817920663357182No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)