FastQCFastQC Report
Mon 5 Aug 2024
EGAF00008207642

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008207642
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences38527545
Total Bases3.8 Gbp
Sequences flagged as poor quality0
Sequence length101
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC1093150.2837320675376539No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC969630.2516718882555325No Hit
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT799520.20751906201134798No Hit
AATCAACACCCTCCTAGCCTTACTACTAATAATTATTACATTTTGACTAC624680.16213854269717937No Hit
CACAATTCTCCGATCCGTCCCTAACAAACTAGGAGGCGTCCTTGCCCTAT588250.15268297006725967No Hit
CTTCAATCAGCCACATAGCCCTCGTAGTAACAGCCATTCTCATCCAAACC581320.15088425696472485No Hit
CCTAGACCAAACCTACGCCAAAATCCATTTCACTATCATATTCATCGGCG481870.125071555947829No Hit
GTAAAACCCAGCCCATGACCCCTAACAGGGGCCCTCTCAGCCCTCCTAAT470850.12221126469387031No Hit
GTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCAT437580.11357588447434167No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG437440.11353954683590661No Hit
CTAAGATTAAAAATGCCCTAGCCCACTTCTTACCACAAGGCACACCTACA430800.11181610455584441No Hit
AGTAGGTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCT415340.10780339105437421No Hit
CCGTCATCTACTCTACCATCTTTGCAGGCACACTCATCACAGCGCTAAGC415050.10772812023190162No Hit
CGCAAAACTAACCCCCTAATAAAATTAATTAACCACTCATTCATCGACCT397430.10315476888029071No Hit
CTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCATGA391720.10167271234126131No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)