FastQCFastQC Report
Sat 3 Aug 2024
EGAF00008207778

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008207778
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11224409
Total Bases1.1 Gbp
Sequences flagged as poor quality0
Sequence length101
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT295830.26355953351307854No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC261470.23294767679973172No Hit
GCAAAACCCCACTCTGCATCAACTGAACGCAAATCAGCCACTTTAATTAA257580.22948201548963512No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC223150.1988077946910167No Hit
CTGCAAAACCCCACTCTGCATCAACTGAACGCAAATCAGCCACTTTAATT207430.18480260297000936No Hit
AATCAACACCCTCCTAGCCTTACTACTAATAATTATTACATTTTGACTAC189670.1689799436210851No Hit
AGTAGGTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCT164540.14659123700855875No Hit
CAACACCCTCCTAGCCTTACTACTAATAATTATTACATTTTGACTACCAC160110.1426444813263665No Hit
CAAAACCCCACTCTGCATCAACTGAACGCAAATCAGCCACTTTAATTAAG153800.1370228044968782No Hit
TGCAAAACCCCACTCTGCATCAACTGAACGCAAATCAGCCACTTTAATTA147070.1310269431557599No Hit
GTTAGTTTTACCCTACTGATGATGTGTTGTTGCCATGGTAATCCTGCTCA138730.12359670785339345No Hit
GATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCG127190.11331554293860817Illumina Single End PCR Primer 1 (100% over 50bp)
GTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCAT125440.11175644080681664No Hit
CGACGACCCATTCGAACGTCTGCCCTATCAACTTTCGATGGTAGTCGCCG123790.11028643022541319No Hit
CTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCATGA121730.10845114428741862No Hit
GTAAAACCCAGCCCATGACCCCTAACAGGGGCCCTCTCAGCCCTCCTAAT119960.10687422384554947No Hit
GTGGCGTTCAGCCACCCGAGATTGAGCAATAACAGGTCTGTGATGCCCTT117920.10505675621763248No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)