FastQCFastQC Report
Mon 5 Aug 2024
EGAF00008207822

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008207822
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences36316828
Total Bases3.6 Gbp
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT972910.26789509260004757No Hit
GGACAAGGCACTTACCAACAGAGATTGCTGATTTGCTCCTTAAGCAAGAG758470.20884808552112535No Hit
CCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG470510.12955701968244585No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC433190.11928079181364629No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC407900.11231707791220093No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)