FastQCFastQC Report
Mon 5 Aug 2024
EGAF00008207860

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008207860
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences55682903
Total Bases5.6 Gbp
Sequences flagged as poor quality0
Sequence length101
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGAGT1092590.19621642212152623No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA1020590.1832860617917137No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC786330.14121569775196527No Hit
GAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGAGTCG760820.1366343992517775No Hit
GTGTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGA658960.11834153115185103No Hit
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT641470.11520053112173408No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC614990.11044503193376967No Hit
GGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGAGTCGGG608770.10932799247194422No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)