FastQCFastQC Report
Mon 5 Aug 2024
EGAF00008207864

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008207864
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences37207717
Total Bases3.7 Gbp
Sequences flagged as poor quality0
Sequence length101
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGAGT670120.18010242337631197No Hit
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT559560.15038815738143782No Hit
GAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGAGTCG547720.14720602180456274No Hit
GGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGAGTCGGG527400.1417447891253312No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC500590.1345392946307348No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC496220.1333648070909591No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA458560.12324325085572975No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)