FastQCFastQC Report
Wed 8 May 2024
EGAF00008211988

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008211988
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences566965
Total Bases21.5 Mbp
Sequences flagged as poor quality0
Sequence length38
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTT48880.8621343469173582No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTT34650.6111488363479227No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTT19860.3502861728678137No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT16200.28573192348734044No Hit
GTACATGGGTGGTATCAACGCAAAAAAAAAAAAAAAAA9340.16473680033159013No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTT7260.12805023237766No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT6430.1134108807421975No Hit
GTACATGGGGTGGTATCAACGCAAAAAAAAAAAAAAAA5870.103533727831524No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)