FastQCFastQC Report
Wed 8 May 2024
EGAF00008212231

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008212231
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences623896
Total Bases23.7 Mbp
Sequences flagged as poor quality0
Sequence length38
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTT26210.42010206829343355No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTT17280.27696923846282073No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT7960.12758536679190122No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTT7940.12726480054368036No Hit
GTACATGGGTGGTATCAACGCAAAAAAAAAAAAAAAAA6630.1062677112852142No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)