FastQCFastQC Report
Wed 8 May 2024
EGAF00008213874

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008213874
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1046123
Total Bases39.7 Mbp
Sequences flagged as poor quality0
Sequence length38
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTT33450.3197520750428009No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTT22360.21374159635148068No Hit
CCCCTATACCTTCTGCATAATGAATTAACTAGAAATAA12050.11518721985846789No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTT11720.1120327150822609No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)