FastQCFastQC Report
Wed 8 May 2024
EGAF00008213950

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008213950
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences924446
Total Bases35.1 Mbp
Sequences flagged as poor quality0
Sequence length38
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTT41700.4510809717387495No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTT27950.3023432412493537No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTT15170.1640982815653916No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT14470.15652617892229506No Hit
CCCCTATACCTTCTGCATAATGAATTAACTAGAAATAA13640.14754782864548063No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)