FastQCFastQC Report
Wed 8 May 2024
EGAF00008221500

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008221500
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences563173
Total Bases21.4 Mbp
Sequences flagged as poor quality0
Sequence length38
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTT78101.3867852329568358No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTT47140.8370429690343819No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTT25550.45367942000060374No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT20160.35797170674020234No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTT7590.1347720860197488No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTT6330.11239885434848618No Hit
GAATAGGACCGCGGTTCTATTTTGTTGGTTTTCGGAAC6190.10991293971834587No Hit
GATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCG5900.10476354512734098No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)