FastQCFastQC Report
Wed 8 May 2024
EGAF00008221822

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008221822
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences461635
Total Bases17.5 Mbp
Sequences flagged as poor quality0
Sequence length38
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTT65001.4080388185471204No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTT43170.9351543968719875No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTT22770.4932468292048913No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT21010.4551214704257693No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTT9070.19647557052649822No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTT7720.167231687372058No Hit
GTACATGGGGTGGTATCAACGCAAAAAAAAAAAAAAAA5570.12065809568165325No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT5570.12065809568165325No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)