FastQCFastQC Report
Wed 8 May 2024
EGAF00008225174

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008225174
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences920225
Total Bases34.9 Mbp
Sequences flagged as poor quality0
Sequence length38
%GC42

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTT77360.8406639680512917No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTT54340.5905077562552636No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTT28740.3123149229807927No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT24910.27069466706511996No Hit
GTACATGGGTGGTATCAACGCAGAAAAAAAAAAAAAAA9590.10421364340242875No Hit
GTACATGGGTGGTATCAACGCAAAAAAAAAAAAAAAAA9330.10138824743948492No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)