FastQCFastQC Report
Wed 8 May 2024
EGAF00008228246

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008228246
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences545695
Total Bases20.7 Mbp
Sequences flagged as poor quality0
Sequence length38
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTT58431.0707446467348976No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTT38700.7091873665692374No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTT17610.3227077396714282No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT13440.24629142652947159No Hit
GTATCAACGCAGAGTACATGGGGAATAATTGCAATCCC11800.21623800841129204No Hit
GTACATGGGGAATAATTGCAATCCCCGATCCCCATCAC11160.20450984524322194No Hit
TATCAACGCAGAGTACATGGGGAATAATTGCAATCCCC8360.15319913138291535No Hit
GATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCG6600.12094668267072266No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTT6380.11691512658169856No Hit
TCTTAGAGGGACAAGTGGCGTTCAGCCACCCGAGATTG5820.10665298380963725No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTT5530.10133865987410551No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)