FastQCFastQC Report
Wed 8 May 2024
EGAF00008230194

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008230194
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences696110
Total Bases26.4 Mbp
Sequences flagged as poor quality0
Sequence length38
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTT46460.66742325207223No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTT29670.4262257401847409No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTT13900.1996810848860094No Hit
ATTCCATTCCATTCCATTCCATTCCATTCCATTCCATT13270.19063079111060036No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT11520.1654910861789085No Hit
GAATGGAATGGAATGGAATGGAATGGAATGGAATGGAA11110.159601212452055No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)