FastQCFastQC Report
Wed 8 May 2024
EGAF00008230602

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008230602
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences906250
Total Bases34.4 Mbp
Sequences flagged as poor quality0
Sequence length38
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTT83040.916303448275862No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTT56830.6270896551724139No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTT27410.3024551724137931No Hit
ATTCCATTCCATTCCATTCCATTCCATTCCATTCCATT22730.25081379310344826No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT21280.23481379310344827No Hit
GAATGGAATGGAATGGAATGGAATGGAATGGAATGGAA18790.20733793103448278No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTT10400.11475862068965517No Hit
GTACATGGGAAGCAGTGGTATCAAAAAAAAAAAAAAAA9500.10482758620689654No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)