FastQCFastQC Report
Wed 8 May 2024
EGAF00008232182

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008232182
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences917076
Total Bases34.8 Mbp
Sequences flagged as poor quality0
Sequence length38
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTT33580.3661637639628559No Hit
ATTCCATTCCATTCCATTCCATTCCATTCCATTCCATT19700.21481316706576117No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTT19540.21306849159720676No Hit
GAATGGAATGGAATGGAATGGAATGGAATGGAATGGAA17580.1916962171074153No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTT10150.1106778500364201No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)