FastQCFastQC Report
Wed 8 May 2024
EGAF00008232389

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008232389
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences621294
Total Bases23.6 Mbp
Sequences flagged as poor quality0
Sequence length38
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTT32000.5150540645813415No Hit
ATTCCATTCCATTCCATTCCATTCCATTCCATTCCATT24160.38886581875891285No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTT19920.32062115520188506No Hit
GAATGGAATGGAATGGAATGGAATGGAATGGAATGGAA17340.27909492124501445No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTT11210.1804298769986512No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT10670.17173833965884105No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)