FastQCFastQC Report
Wed 8 May 2024
EGAF00008233502

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008233502
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences784742
Total Bases29.8 Mbp
Sequences flagged as poor quality0
Sequence length38
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTT56850.7244419184904083No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTT34030.433645707761277No Hit
ATTCCATTCCATTCCATTCCATTCCATTCCATTCCATT17920.22835530658483932No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTT17130.21828830367178004No Hit
GAATGGAATGGAATGGAATGGAATGGAATGGAATGGAA15800.20134005826118648No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT13510.17215849285497656No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)