FastQCFastQC Report
Wed 8 May 2024
EGAF00008236793

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008236793
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8904822
Total Bases810.3 Mbp
Sequences flagged as poor quality0
Sequence length91
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTGTCAAGATGCTACCGTTCAGAGCCCCACCAGGTTGCTTTGTCGGACG154321917.33014988957668No Hit
GTTGTCAAGATGCTACCGTTCAGAGCGCGTCCAATTTCCGAAGCCCCGCC89576210.059291471519588No Hit
GTTGTCAAGATGCTACCGTTCAGAGGTGATCCGCGCAGGCACACATACCG7366758.272765025510898No Hit
GTTGTCAAGATGCTACCGTTCAGAGGCAGCCGGCGTCGTACGAGGCACAG6052836.7972498495758815No Hit
GTTGTCAAGATGCTACCGTTCAGAGGCCCATTCATTGCACCCGCCAGTGA4875765.475415454682867No Hit
GTTGTCAAGATGCTACCGTTCAGAGTGTCTACGTCGGACCGCAAGAAGTG3798854.266059445096151No Hit
GTTGTCAAGATGCTACCGTTTATGGCAGGCGAGCGATTGTACTAGGTTTC101470.11394949837290402No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)