FastQCFastQC Report
Sun 12 May 2024
EGAF00008243680

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008243680
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences174166274
Total Bases4.8 Gbp
Sequences flagged as poor quality0
Sequence length28
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGCCGCAGGCTCCACTCCTGGTGGTGC7167080.41150791340922876No Hit
GCTGCGGATATGGGTACGGCCCGGCGCG5901050.3388170318209828No Hit
TGCCCTCCAATGGATCCTCGTTAAAGGA5404420.31030232638495786No Hit
CCACCTACTAAGAACGGCCATGCACCAC3628150.20831530219220284No Hit
CGTTCGTTATCGGAATTAACCAGACAAA3228040.1853424274323053No Hit
GTGGGCAAATTTAAAGTTGAACTAAGAT3067850.17614489473432726No Hit
TGCCCTACAATGGATCCTCGTTAAAGGA2965330.17025856567385714No Hit
GTCTCGTTCGTTATCGGAATTAACCAGA2684810.1541521178778849No Hit
AGGTCCGTCTTGCGCCGGTCCAAGAATT1931540.11090206821557198No Hit
GCAGCAACTTTAATATACGCTATTGGAG1817220.10433822566589442No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)