FastQCFastQC Report
Fri 29 Sep 2023
EGAF00008244372

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008244372
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences95823623
Sequences flagged as poor quality0
Sequence length10
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCTTCCGGT9145558995.44158959633576No Hit
GGGGGGGGGG5617030.5861842648132809No Hit
CTCTTCCGGT3854900.40229119702560195No Hit
ATCTTACGGT2054390.21439285383730483No Hit
ATATTCCGGT2016280.2104157552047474RNA PCR Primer, Index 37 (100% over 10bp)
ATCTACCGGT1841010.1921248583973912No Hit
ATCTTCAGGT1413010.14745946310128558No Hit
ATCTTCCGGG1255890.13106267125800491No Hit
AACTTCCGGT1152680.12029184077082954No Hit
ATCTTCCGTG1115520.11641388261848541No Hit
ATCTCCGGTG983740.10266153263689477No Hit
ATCGTCCGGT966190.10083004271295398No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)