FastQCFastQC Report
Fri 29 Sep 2023
EGAF00008245137

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008245137
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences50091309
Sequences flagged as poor quality0
Sequence length101
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCG2000210.399312782981974Illumina Single End PCR Primer 1 (100% over 50bp)
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN665440.13284540038672177No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)