FastQCFastQC Report
Sat 11 May 2024
EGAF00008272912

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008272912
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences165868260
Total Bases1.3 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCTGCGC6807389441.04094056331211No Hit
GAGGATCT4127543924.884470965090006No Hit
CTTATGAG3313477419.97656091647673No Hit
AGACCATA1715852310.344669317686217No Hit
CTTAGGAG42708712.5748572994013443No Hit
CTTCTGAG4906230.29579076792630493No Hit
AGACTATA2081850.12551225894574405No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)