FastQCFastQC Report
Sat 11 May 2024
EGAF00008272915

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008272915
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences165376085
Total Bases1.3 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCTGCGC6780532141.00068096303042No Hit
GAGGATCT4112481124.86744743050363No Hit
CTTATGAG3296575419.933809655731057No Hit
AGACCATA1710628110.343866224672087No Hit
CTTAGGAG43483482.6293692948409078No Hit
CTTCTGAG5582940.33759052888451196No Hit
AGACTATA2066260.12494309561143621No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)