FastQCFastQC Report
Sat 11 May 2024
EGAF00008272918

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008272918
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences163565687
Total Bases1.3 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC56

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCTGCGC6699692240.960254701831204No Hit
GAGGATCT4073758424.90594741915522No Hit
CTTATGAG3243280719.82861295352246No Hit
AGACCATA1693948810.356382387217925No Hit
CTTAGGAG44048512.6930165371420474No Hit
CTTCTGAG5773510.3529780668484582No Hit
AGACTATA2060460.12597140866103537No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)