FastQCFastQC Report
Sat 11 May 2024
EGAF00008272924

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008272924
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences196355127
Total Bases1.5 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGCACCGT6353477932.357076675670406No Hit
CTTGGTAC4580390923.327075640861672No Hit
GCACAATG4428861422.55536418970104No Hit
AAGTTGCA4140776021.088199036432595No Hit
GCACAATA2745050.13980027116888066No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)