FastQCFastQC Report
Sat 11 May 2024
EGAF00008272927

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008272927
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences195791108
Total Bases1.5 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGCACCGT6330523932.33305110056377No Hit
CTTGGTAC4565420923.317815332042557No Hit
GCACAATG4424449522.597806127130145No Hit
AAGTTGCA4126094021.07396011058888No Hit
GCACAATA2749230.14041648919010152No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)