FastQCFastQC Report
Sat 11 May 2024
EGAF00008272933

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008272933
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences194460294
Total Bases1.5 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGCACCGT6306329732.42990931608897No Hit
CTTGGTAC4540019623.34676918672148No Hit
GCACAATG4370332022.474161229027043No Hit
AAGTTGCA4092169821.043729369245938No Hit
GCACAATA2715640.13965010255512625No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)