FastQCFastQC Report
Wed 8 May 2024
EGAF00008272936

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008272936
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24423806
Total Bases195.3 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCAGTAGA673352227.56950329526856No Hit
CAGTACTG610921025.013341491493996No Hit
TTCCCGAC608279324.90518062582056No Hit
AGTAGTCT525474021.514828606155813No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)