FastQCFastQC Report
Wed 8 May 2024
EGAF00008272937

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008272937
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24423806
Total Bases635 Mbp
Sequences flagged as poor quality0
Sequence length26
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCTCGTTCGTTATCGGAATTAACCA642010.2628623892607073No Hit
CGTTCGTTATCGGAATTAACCAGACA510960.20920572330127418No Hit
TGACTTTTACTTCCTCTAGATAGTCA417950.17112402546924915No Hit
CCACCTACTAAGAACGGCCATGCACC397010.1625504231404393No Hit
AAGCCGCAGGCTCCACTCCTGGTGGT336350.13771399920225375No Hit
ACCTTTAAGTTTCAGCTTTGCAACCA316700.12966857008281182No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)