FastQCFastQC Report
Wed 8 May 2024
EGAF00008272940

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008272940
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences25076246
Total Bases651.9 Mbp
Sequences flagged as poor quality0
Sequence length26
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCTCGTTCGTTATCGGAATTAACCA660700.26347643901722767No Hit
CGTTCGTTATCGGAATTAACCAGACA522930.20853599857012092No Hit
TGACTTTTACTTCCTCTAGATAGTCA440260.17556854403167044No Hit
CCACCTACTAAGAACGGCCATGCACC410800.1638203740703453No Hit
AAGCCGCAGGCTCCACTCCTGGTGGT347980.1387687774318373No Hit
ACCTTTAAGTTTCAGCTTTGCAACCA326870.1303504519775408No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)