FastQCFastQC Report
Thu 9 May 2024
EGAF00008272942

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008272942
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22447685
Total Bases179.5 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAACGCCT656842029.26101288395663No Hit
TGTGCGGG646581128.80391006912294No Hit
ACCATAAC536304323.8912965858172No Hit
GTGTATTA371069316.53040391470212No Hit
GGGTATTA542950.24187349385916632No Hit
CAACGCCA462860.20619498179879125No Hit
TGTGCGGA458790.20438187724034795No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)