FastQCFastQC Report
Wed 8 May 2024
EGAF00008272945

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008272945
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22949599
Total Bases183.5 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAACGCCT672088229.285400585866444No Hit
TGTGCGGG662086528.849589049464434No Hit
ACCATAAC548671723.907681349900713No Hit
GTGTATTA379507116.5365460198237No Hit
GGGTATTA492650.21466606017821926No Hit
CAACGCCA477530.2080777097673907No Hit
TGTGCGGA471830.20559400623949897No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)