FastQCFastQC Report
Sat 11 May 2024
EGAF00008272948

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008272948
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences247128112
Total Bases1.9 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGCAGTC7790603031.524551929567608No Hit
GCAGTTCT6043030224.45302621014642No Hit
CTTTGCGG5484530922.19306761830479No Hit
TGCACAAA5223718621.13769476780529No Hit
CTTTGCGA3821240.1546258727538047No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)