FastQCFastQC Report
Sat 11 May 2024
EGAF00008272951

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008272951
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences246666897
Total Bases1.9 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGCAGTC7784153331.557348775502696No Hit
GCAGTTCT6026639824.43230069902732No Hit
CTTTGCGG5475744522.19894346017577No Hit
TGCACAAA5208789621.11669487616735No Hit
CTTTGCGA3822810.15497863906724377No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)