FastQCFastQC Report
Sat 11 May 2024
EGAF00008272954

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008272954
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences244090343
Total Bases1.9 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGCAGTC7683314031.477337061220812No Hit
GCAGTTCT5971394924.463871968912756No Hit
CTTTGCGG5421529422.21115892323524No Hit
TGCACAAA5159392821.13722622774962No Hit
CTTTGCGA3745860.1534620318838259No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)