FastQCFastQC Report
Sat 11 May 2024
EGAF00008272957

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008272957
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences244331592
Total Bases1.9 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGCAGTC7699982331.514476850787272No Hit
GCAGTTCT5980940624.478785371316206No Hit
CTTTGCGG5423005422.195268960552593No Hit
TGCACAAA5150344021.079320761762155No Hit
CTTTGCGA3759030.15384952757153073No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)