FastQCFastQC Report
Wed 8 May 2024
EGAF00008272963

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008272963
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences26880009
Total Bases215 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCAAGGCC793063729.503848008384224No Hit
GATGCCAA663952424.70060184875682No Hit
AGGTATTG603562422.453950815269444No Hit
CTCCTAGT592925922.058247822759284No Hit
CTCCTAGA441250.16415545098961834No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)