FastQCFastQC Report
Sat 11 May 2024
EGAF00008272966

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008272966
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences202091481
Total Bases1.6 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGCGCTG6125614930.31109906112272No Hit
TCCAATGC4959694724.541829647930584No Hit
GTAGCACA4742872923.46894028650322No Hit
CGTTTGAT4237299920.96723661498626No Hit
AAGCGCTA2831580.1401137735241794No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)